Index

_

_add_current_distribution() (in module src_rec.fwd_mdl), [1] _calc_acc_hem_normals() (in module src_rec.fwd_mdl), [1] _calc_bem_fields() (in module src_rec.fwd_mdl), [1] _calc_coreg() (in module src_rec.coreg), [1] _calc_magnetic_fields() (in module src_rec.fwd_mdl), [1] _calc_mri_maps() (in module src_rec.subj_to_fsavg), [1] _calc_sensor_noise_cov() (in module src_rec.sen_cov), [1] _calc_small_to_default_vertices_proj() (in module src_rec.subj_to_fsavg), [1] _calc_whitener() (in module src_rec.inv_mdl), [1] _comp_src_sen_contrib() (in module src_rec.fwd_mdl), [1] _create_fiducials() (in module src_rec.freesurfer), [1] _create_source_mesh_model() (in module src_rec.cort_mdl), [1] _empirically_estimate_cov() (in module src_rec.sen_cov), [1] _find_diag_omega() (in module src_rec.bem_mdl), [1] _find_non_diag_omega() (in module src_rec.bem_mdl), [1] _find_vertex_clusters() (in module src_rec.fwd_mdl), [1] _format_fiducials() (in module src_rec.coreg), [1] (in module src_rec.freesurfer), [1] _get_bio_channel_type_idx() (in module src_rec.sen_cov), [1] _get_meg_channel_type_idx() (in module src_rec.inv_mdl), [1] _get_meg_coil_info() (in module src_rec.fwd_mdl), [1] _get_meg_coil_positions() (in module src_rec.fwd_mdl), [1] _get_mri_to_model_trans() (in module src_rec.avg_src_reg), [1]

_get_ref_ptn_cnt() (in module src_rec.coreg), [1] _get_rot_and_scale_mat() (in module src_rec.coreg), [1] _get_rot_mat() (in module src_rec.coreg), [1] _get_sphere_faces() (in module src_rec.avg_src_reg), [1] _get_trans_and_rot_mat() (in module src_rec.coreg), [1] _get_transformation_matrix() (in module src_rec.coreg), [1] _load_and_orient_t1() (in module src_rec.skull_skin_mdls), [1] _load_hd_surf() (in module src_rec.coreg), [1] _load_mri_ref_pts() (in module src_rec.coreg), [1] _match_source_mesh_model() (in module src_rec.cort_mdl), [1] _plot_subplots() (in module src_rec.skull_skin_mdls), [1] _read() (in module src_rec.cort_mdl), [1] _read_freesurfer_annotation() (in module src_rec.avg_src_reg), [1] _refine_registration() (in module src_rec.coreg), [1] _registrate_3d_points_free() (in module src_rec.coreg), [1] _registrate_3d_points_restricted() (in module src_rec.coreg), [1] _rm_bad_head_shape_pts() (in module src_rec.coreg), [1] _rm_out_of_in_skull_vert() (in module src_rec.cort_mdl), [1] _rotation() (in module src_rec.coreg), [1] _scaling() (in module src_rec.coreg), [1] _tessellate_sphere() (in module src_rec.sphere_mdl), [1] _translation() (in module src_rec.coreg), [1] _update_invalid_vertices() (in module src_rec.cort_mdl), [1]

A

apply() (in module src_rec.inv_mdl), [1] (in module src_rec.subj_to_fsavg), [1]

apply_inv_transformation() (in module src_rec.utils), [1]

B

basic module

BEM_mdl() (in module src_rec.bem_mdl), [1] butter() (in module filters.frequency)

C

calc_quat_angle() (in module src_rec.utils), [1] calculate_sphere_from_icosahedron() (in module src_rec.sphere_mdl), [1] calculate_sphere_from_octahedron() (in module src_rec.sphere_mdl), [1] cfc module ch_names (in module src_rec.sen_cov), [1] cleansing module

compute() (in module src_rec.fwd_mdl), [1] (in module src_rec.inv_mdl), [1] (in module src_rec.subj_to_fsavg), [1] copy_fsavg_anatomy() (in module src_rec.freesurfer), [1] Coreg() (in module src_rec.coreg), [1] Cort_mdl() (in module src_rec.cort_mdl), [1]

E

evals (in module src_rec.sen_cov), [1] evecs (in module src_rec.sen_cov), [1]

extract_mri_anatomy() (in module src_rec.freesurfer), [1] extract_skull_skin() (in module src_rec.freesurfer), [1]

F

fast_cross_product() (in module src_rec.utils), [1] file_io module filters module

find_nearest_neighbor() (in module src_rec.utils), [1] find_valid_vertices() (in module src_rec.utils), [1] fir() (in module filters.frequency)

G

get() (in module src_rec.cort_mdl), [1]

get_eigenbasis() (in module src_rec.utils), [1]

I

init_fs_paths() (in module src_rec.freesurfer), [1]

Inv_mdl() (in module src_rec.inv_mdl), [1]

L

load() (in module file_io.data_manager) (in module src_rec.sen_cov), [1]

load_meg_ref_pts() (in module src_rec.coreg), [1]

M

magn_of_vec() (in module src_rec.utils), [1] misc module module basic cfc cleansing file_io filters misc sfc src_rec, [1] statistical visualization

N

noise_norm (in module src_rec.inv_mdl), [1]

norm_vert() (in module src_rec.utils), [1]

O

orient_mat_to_block_format() (in module src_rec.utils), [1]

P

plot() (in module src_rec.skull_skin_mdls), [1] plot_coregistration() (in module src_rec.coreg), [1]

prepare() (in module src_rec.subj_to_fsavg), [1] prune_closeby_vert() (in module src_rec.sphere_mdl), [1]

R

read() (in module src_rec.skull_skin_mdls), [1] read_sphere_from_icosahedron_in_fs_order() (in module src_rec.sphere_mdl), [1] restrict() (in module src_rec.fwd_mdl), [1] run() (in module basic.car) (in module basic.downsampling) (in module cleansing.bad_channel_identification) (in module cleansing.channel_restoration) (in module cleansing.outlier_removal) (in module file_io.load_brainvision_data), [1] (in module misc.timed_pool) (in module src_rec.avg_src_reg), [1] (in module src_rec.bem_mdl), [1] (in module src_rec.coreg), [1] (in module src_rec.sen_cov), [1] (in module statistical.glmm) run_cc() (in module sfc.fd) (in module sfc.td) run_dac() (in module sfc.cd) (in module sfc.fd) (in module sfc.td)

run_dmi() (in module cfc.pac) run_ic() (in module sfc.cd) (in module sfc.fd) (in module sfc.td) run_mi() (in module cfc.pac) run_msc() (in module sfc.cd) (in module sfc.fd) (in module sfc.td) run_mvl() (in module cfc.pac) run_plv() (in module cfc.pac) run_psi() (in module sfc.cd) (in module sfc.fd) (in module sfc.td) run_subprocess_in_custom_working_directory() (in module src_rec.utils), [1] run_wpli() (in module sfc.cd) (in module sfc.fd) (in module sfc.td)

S

save() (in module file_io.data_manager) Sen_cov() (in module src_rec.sen_cov), [1] sfc module

Skull_skin_mdls() (in module src_rec.skull_skin_mdls), [1] src_rec module, [1] statistical module

T

trans (in module src_rec.inv_mdl), [1]

V

visualization module